Discover credible accounting firms in Rochester, NY, specializing in fund management, farm accounting, and growth-stage businesses across the Monroe, Ontario, and Orleans counties. Use filters to narrow your search and find the right partner.

Organic rankings are determined by five factors: top services, reviews, portfolio, awards/press, and team expertise. Sponsored listings pay for a placement that appears above organic positions. Sponsorship does not affect star ratings or review content - read more on our methodology page.

United States × New York × Rochester ×Clear Filters
  • Accounting. Bookkeeping. Tax Planning.

    Accounting. Bookkeeping. Tax Planning.

    Founded in 1997, Young & Company handles individual, corporate, partnership, trust, and nonprofit tax returns alongside accounting and financial management. Veteran-owned and family-operated, the firm best serves small- to mid-sized businesses wanting direct, personalized service...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Trusted Income Tax & Accounting Services

    Trusted Income Tax & Accounting Services

    Bianchi & Associates has served Rochester businesses since 1945, covering accounting, bookkeeping, federal & NYS tax preparation, & financial planning. Led by a team of certified financial planners, the Rochester accounting firm is an ideal match for small businesses seeking hands-on, proven support...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Over 35 Years of Tax & Accounting Excellence

    Over 35 Years of Tax & Accounting Excellence

    Flower City Tax & Accounting positions itself as an alternative to impersonal, national franchises. A trusted accounting firm in Rochester for 35+ years, it offers tax preparation, bookkeeping, sales tax, business formation, & QuickBooks setup. Fits small businesses wanting personalized services...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Your Financial Management Advisors

    Your Financial Management Advisors

    Greendyke Jencik & Associates combines small-business personalization with national-firm resources, backed by 22+ years of experience. Its offerings span tax compliance & consulting, M&A, advisory, international tax, & business formation. Suits companies seeking advisory & day-to-day accounting...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Accounting Excellence

    Accounting Excellence

    DeMott & Smith CPA’s, P.C. is a locally owned public accounting firm serving the greater Rochester, New York area. We have been providing accounting, auditing, tax filing and consulting services to high net-worth individuals and closely-held businesses for over twenty five years...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Personalized Tax & Wealth Management

    Personalized Tax & Wealth Management

    Dave Kaplan is a Rochester accounting firm founded in 1934 with sector-specific expertise in manufacturing, construction, healthcare, & professional services. Its services span tax, audit, accounting, advisory, & business retirement. Suits business owners seeking company & personal wealth management...

    Top Services:

    • Accounting
    Location
    Rochester, New York
    Number of Employees
    100 - 249
  • Collaborating for Lasting Impact in Business Consulting

    Collaborating for Lasting Impact in Business Consulting

    Deloitte offers audit, tax, and accounting advisory services, backed by a 180+ year history and a global network of member firms. It has served 9,000+ US-based private companies and is a strong fit for enterprises and multinational corporations needing complex, multi-jurisdictional compliance support...

    Top Services:

    • Business Consulting
    • Accounting
    • HR Outsourcing
    • Big Data Analytics
    • CRM Consulting
    • Show more
    Location
    Rochester, New York
    Number of Employees
    1000 & Up
    Portfolios Count
    6 Projects Listed
  • A Leading Accounting Firm in Rochester

    A Leading Accounting Firm in Rochester

    Welker Mojsej & DelVecchio designs its services around the business stage, goals, and resources of its clients, backed by 22+ years in business. Its services span accounting, bookkeeping, financial statements, tax prep, consulting, and business valuation. Best for SMBs needing financial guidance...

    Top Services:

    • Accounting
    • Business Consulting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • The Highest Standard

    The Highest Standard

    Insero delivers business tax, audit, R&D credit, cost segregation, transaction advisory, and outsourced accounting services, with 98% of clients recommending the firm. The top-rated Rochester accounting firm best serves organizations needing broad, specialized advisory beyond tax filing...

    Top Services:

    • Accounting
    • Business Consulting
    • BPO
    Location
    Rochester, New York
    Number of Employees
    100 - 249
  • Our Success Is a Result of Your Success.

    Our Success Is a Result of Your Success.

    Conlon & Company has been providing tax preparation, bookkeeping, multistate tax, & identity theft expertise to Rochester businesses since 1984. Led by a team of certified specialists, the Rochester accounting firm is a strong fit for small New York businesses seeking a relationship-driven CPA...

    Top Services:

    • BPO
    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • Simplifying Your Finance Since 1975

    Simplifying Your Finance Since 1975

    Established in 1979, Nacca & Capizzi offers business consulting, audit, assurance, bookkeeping, cost segregation studies, franchisor financial statement audits, and corporate tax preparation. Best serves construction, restaurant, real estate, and nonprofit clients needing industry-specific accounting...

    Top Services:

    • Business Consulting
    • Accounting
    Location
    Rochester, New York
    Number of Employees
    Under 49
  • We Value Your Future.

    We Value Your Future.

    MMB+CO supports business growth at every stage, offering full-service accounting backed by 100+ years of joint experience. Its services cover assurance, audit, business advisory, tax, & cybersecurity. It best serves privately held companies, financial institutions, nonprofits, & government entities...

    Top Services:

    • Business Consulting
    • Accounting
    Location
    Rochester, New York
    Number of Employees
    100 - 249
  • Finding Solutions to Drive Results

    Finding Solutions to Drive Results

    Flaherty Salmin brings 68+ years of experience in affordable housing and community development, backed by AICPA-qualified members who can peer review other accounting firms nationwide. It also offers business consulting and tax services, making it ideal for affordable housing developers and firms...

    Top Services:

    • Business Consulting
    • Accounting
    Location
    Rochester, New York
    Number of Employees
    50 - 99
  • Committed to Building Trust & Confidence

    Committed to Building Trust & Confidence

    With over 60 years of experience, EFPR handles international tax compliance, specialized audits, business valuation, forensic accounting, and consulting across 20+ sectors, from affordable housing to healthcare. Now part of Springline Advisory, it best serves mid-market and nonprofit clients...

    Top Services:

    • Business Consulting
    • Accounting
    Location
    Rochester, New York
    Number of Employees
    100 - 249
  • Financial Guidance. Business Clarity.

    Financial Guidance. Business Clarity.

    Thaney & Associates has helped 700+ businesses over 50 years. Certified Valuation Analysts handle succession planning, M&As, business brokering, internal controls, tax, & accounting services. The firm suits established businesses navigating ownership transitions, valuations, or transactional deals...

    Top Services:

    • Business Consulting
    • Accounting
    • BPO
    Location
    Rochester, New York
    Number of Employees
    50 - 99
  • Building A Better Working World

    Building A Better Working World

    EY provides audit, tax, transaction, and financial accounting advisory services through a 400K+ global network of member firms, backed by its proprietary suite of AI tools. Its reach spans banking, life sciences, and energy, serving large enterprises needing cross-border compliance support...

    Top Services:

    • Business Consulting
    • HR Outsourcing
    • Accounting
    • Cybersecurity
    • IT Services
    • Show more
    Location
    Rochester, New York
    Number of Employees
    1000 & Up

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Frequently Asked Questions About Accounting Firms Rochester NY

What services do Rochester accounting firms typically offer?

Accounting firms in Rochester, New York, offer a comprehensive range of services that help businesses maintain regulatory compliance and meet their financial goals. These typically include: 

  • Bookkeeping: Recording and managing daily incoming and outgoing transactions, such as equipment purchases and payment of bills, to keep ledger up to date. 
  • Payroll management: Computing and processing employee compensation, including wages, benefits, and payroll taxes according to federal, New York state, and local tax rules. 
  • Business tax preparation and filing: Preparing a business’s tax returns and compiling supporting documents to help ensure accurate, compliant filings. 
  • Audits and assurances: Analyzing a business’s financial statements and internal controls for accuracy, fairness, and regulatory adherence. 
  • Business advisory and consulting: Offering specialized expertise, such as litigation, business valuation, forensic accounting, and financial planning support.  
  • Business formation: Providing guidance on entity choice (e.g., S-Corp, LLC, etc.) and tax implications for the New York business incorporation process. 

Additionally, many offer accounting software setups (e.g., QuickBooks and ZOHO), trust and estate tax support, and individual and family accounting services. 

What is the difference between an enrolled agent and a certified public accountant in Rochester, New York?

In summary, an enrolled agent (EA) is a federal-licensed professional who specializes in tax work. On the other hand, a certified public accountant (CPA) is a state-licensed professional who can provide broader accounting and assurance services in addition to tax. Here’s a breakdown of their differences: 

 Rochester EARochester CPA
Services
  • Tax returns, collections, and appeals 
  • IRS audits and representation
  • Tax returns, collections, and appeals 
  • IRS and financial audits 
  • IRS representation 
  • Bookkeeping and payroll 
  • Financial planning and analysis
Certifications
  • IRS or Treasury credential earned by passing the Special Enrollment Examination (SEE)  
  • Preparer tax identification number (PTIN) for preparing and filing federal tax returns 
  • New York State CPA license issued by the NYSED Office of the Professions 
  • Preparer tax identification number (PTIN) for preparing and filing federal tax returns 
Best for
  • Tax-focused engagements, especially at the federal level 
  • More comprehensive financial services 
  • Region and state-specific tax issues 

What industries do they specialize in?

Accountants in Rochester, NY specialize in multiple industries, as they cater to the various needs of businesses in the Greater Rochester area. However, they’re more commonly known to serve the following: 

  • Manufacturing: Known as the birthplace of Kodak, Xerox, and Bausch & Lomb, many local firms are experienced in variance analysis, inventory costing, and operational KPIs tailored to the manufacturing sector. 
  • Healthcare: With institutions like Rochester General Hospital and Unity Hospital of Rochester, accountants are experts in revenue cycle management, medical bookkeeping, and reimbursement-related reporting. 
  • Education: Home to Rochester Institute of Technology and University of Rochester, firms are skilled in Uniform Guidance/Single Audit support, grant accounting, and board reporting. 
  • Government: As a major employment sector in the region, many accountants have expertise in GASB-based reporting and compliance reporting. 
  • Agribusiness: Dubbed the front door to the Finger Lakes Region, Rochester accounts for 21% of New York’s farmland. As such, local accountants are skilled in farm accounting, seasonal cash flow management, and navigating the USDA, FDA, and EPA regulations. 

On top of these sectors, Rochester accountants are also experts in accounting for nonprofit organizations, food and beverage businesses, real estate companies, dental practices, and more.  

How far back can your business be audited in New York?

Your business can be audited for up to three years after a return is filed, according to the New York State Tax Law. However, the statute of limitations can be extended to over 6 years when there’s an indication of tax avoidance, or the taxpayer omits over 25% of their gross income. 

There may be no time limit to assess additional tax if the business fails to file a tax return, or if the IRS suspects fraudulent behavior, gross negligence, or tax evasion.  

Additionally, businesses that qualify for New York’s Voluntary Disclosure and Compliance Program can expect a 3-6-year lookback period to resolve tax debts and gain protection from criminal referrals. 

Can a Rochester accounting firm represent you in a New York audit?

Yes. Qualified accounting firms in Rochester (e.g., New York-licensed CPA with a PTIN) can represent you before the New York State Department of Taxation and Finance if you authorize it with the power of attorney.  

Because these firms understand New York's audit process, they can help you compile the necessary documents to defend your position and negotiate with the IRS or state representative to reduce risk and liability.